Archive for del.icio.us
links for 2010-08-27
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"So, let’s get down to the nitty gritty. If consumer debt was $13.8 trillion at the end of 2008 and the banks have since written off 5.66% of that debt, total write-offs were $800 billion. If total consumer debt now sits at $13.5 trillion, then consumers have actually taken on $500 billion of additional debt since the end of 2008. The consumer hasn’t cut back at all. They are still spending and borrowing. It is beyond my comprehension that no one on CNBC or in the other mainstream media can do simple math to figure out that the deleveraging story is just a Big Lie."
links for 2010-08-24
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"I strongly suspect these patterns are driven mostly by customers, i.e., that more accurate professionals would be less successful in inspiring confidence by others in them. If you are a successful professional, that is probably in part because of your unjustified arrogance."
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"We all have preconceived ideas about what hummingbirds’ lives are like, but so much of their world is imperceptible to the human eye. Filmmaker Ann Prum describes the breakthrough science and latest technologies that allowed her and the crew to reveal incredible new insights about these aerial athletes."
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"The remaining charts compare market performance since 2000 with the equivalent elapsed time following the peak in 1929. As the final chart shows, the current real total return over the past decade is worse than the performance over the equivalent timeframe during the Great Depression."
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"Here is the trailer for Inside Job, Charles Ferguson's upcoming documentary about the financial crisis of 2008. Looks like interesting and well-done stuff."
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"I think every body who’s breathed the air around eco nom ics gets the the sis that money is an eco nomic prod uct sub ject to sup ply and demand like any other. But to actu ally see it bro ken down as analy sis of dis crete things — a fiat cur rency backed by the full faith and credit of the US gov’t but whose weight and mate ri als and cost and dura bil ity and shape all turn out to be cru cial to its suc cess or fail ure — man, it’s another thing altogether. "
links for 2010-08-20
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"We understand the dynamics of the world around us as by associating pairs of events, where one event has some influence on the other. These pairs of events can be aggregated into a web of memories representing our understanding of an episode of history. The events and the associations between them need not be directly experienced-they can also be acquired by communication. In this paper we take a network approach to study the dynamics of memories of history. First we investigate the network structure of a data set consisting of reported events by several individuals and how associations connect them. We focus our measurement on degree distributions, degree correlations, cycles (which represent inconsistencies as they would break the time ordering) and community structure.…"
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"he motility of the worm nematode \textit{Caenorhabditis elegans} is investigated in shallow, wet granular media as a function of particle size dispersity and area density ($\phi$). Surprisingly, we find that the nematode's propulsion speed is enhanced by the presence of particles in a fluid and is nearly independent of area density. The undulation speed, often used to differentiate locomotion gaits, is significantly affected by particle size dispersity for area densities above $\phi \geq 0.55$, and is characterized by a change in the nematode's waveform from swimming to crawling in dense polydisperse media \textit{only}. This change highlights the organism's adaptability to subtle differences in local structure between monodisperse and polydisperse media."
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"A short survey is provided about our recent explorations of the young topic of noise-based logic. After outlining the motivation behind noise-based computation schemes, we present a short summary of our ongoing efforts in the introduction, development and design of several noise-based deterministic multivalued logic schemes and elements. In particular, we describe classical, instantaneous, continuum, spike and random-telegraph-signal based schemes with applications such as circuits that emulate the brain's functioning and string verification via a slow communication channel."
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"We consider problems of Bayesian inference for a spatial epidemic on a graph, where the final state of the epidemic corresponds to bond percolation, and where only the set or number of finally infected sites is observed. We develop appropriate Markov chain Monte Carlo algorithms, demonstrating their effectiveness, and we study problems of optimal experimental design. In particular, we demonstrate that for lattice-based processes an experiment on a sparsified lattice can yield more information on model parameters than one conducted on a complete lattice. We also prove some probabilistic results about the behaviour of estimators associated with large infected clusters."
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"At the most fundamental level, computers are an assembly of gates that are used to perform the basic operations required to execute a program. For problems in the probability domain, even the values used in these most basic operations are not constrained to be either a 0 or a 1. Instead, the basic gates must determine the probability that a bit is a 1, or the probability that it is a 0.
Lyric’s gates are designed to model relationships between probabilities natively in the device physics. For this reason, Lyric can perform mathematical operations in the probability domain with just a handful of transistors – creating power and area savings of more than 10X over traditional implementations." -
"Zipf's law seems to be ubiquitous in human languages and appears to be a universal property of complex communicating systems. Following an early proposal made by Zipf concerning the presence of a tension between the efforts of speaker and hearer in a communication system, we introduce evolution by means of a variational approach to the problem based on Kullback's Minimum Discrimination of Information Principle. Using a formalism fully embedded in the framework of information theory, we demonstrate that Zipf's law is the only expected outcome of an evolving, communicative system under a rigorous definition of the communicative tension described by Zipf."
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"We engineer an algorithm to solve the approximate dictionary matching problem. Given a list of words $\mathcal{W}$, maximum distance $d$ fixed at preprocessing time and a query word $q$, we would like to retrieve all words from $\mathcal{W}$ that can be transformed into $q$ with $d$ or less edit operations. We present data structures that support fault tolerant queries by generating an index. On top of that, we present a generalization of the method that eases memory consumption and preprocessing time significantly. At the same time, running times of queries are virtually unaffected. We are able to match in lists of hundreds of thousands of words and beyond within microseconds for reasonable distances."
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"The effects of several nonlinear regularization techniques are discussed in the framework of 3D seismic tomography. Traditional, linear, $\ell_2$ penalties are compared to so-called sparsity promoting $\ell_1$ and $\ell_0$ penalties, and a total variation penalty. Which of these algorithms is judged optimal depends on the specific requirements of the scientific experiment. If the correct reproduction of model amplitudes is important, classical damping towards a smooth model using an $\ell_2$ norm works almost as well as minimizing the total variation but is much more efficient. If gradients (edges of anomalies) should be resolved with a minimum of distortion, we prefer $\ell_1$ damping of Daubechies-4 wavelet coefficients.…"
links for 2010-08-17
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"Assume that we observe a large number of curves, all of them with identical, although unknown, shape, but with a different random shift. The objective is to estimate the individual time shifts and their distribution. Such an objective appears in several biological applications like neuroscience or ECG signal processing, in which the estimation of the distribution of the elapsed time between repetitive pulses with a possibly low signal-noise ratio, and without a knowledge of the pulse shape is of interest. We suggest an M-estimator leading to a three-stage algorithm: we split our data set in blocks, on which the estimation of the shifts is done by minimizing a cost criterion based on a functional of the periodogram; the estimated shifts are then plugged into a standard density estimator. We show that under mild regularity assumptions the density estimate converges weakly to the true shift distribution. The theory is applied both to simulations and to alignment of real ECG signals.…"
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"Motivation: Second generation sequencing technology makes it feasible for many researches to obtain enough sequence reads to attempt the de novo assembly of higher eukaryotes (including mammals). De novo assembly not only provides a tool for understanding wide scale biological variation, but within human bio-medicine, it offers a direct way of observing both large scale structural variation and fine scale sequence variation. Unfortunately, improvements in the computational feasibility for de novo assembly have not matched the improvements in the gathering of sequence data. This is for two reasons: the inherent computational complexity of the problem, and the in-practice memory requirements of tools."
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"Whereas a conventional NAND gate outputs a "1" if neither of its inputs match, the output of a Bayesian NAND gate represents the odds that the two input probabilities match. This makes it possible to perform calculations that use probabilities as their input and output."
links for 2010-08-15
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"Using frequency distributions of daily closing price sequences of several stock markets, we investigate whether the bias away from an equiprobable sequence distribution, predicted by algorithmic probability, may account for some of the deviation of financial markets from log-normal, and if so for how much of said deviation and over what sequence lengths. Our discussion might constitute a potential starting point for a further investigation of the market as a rule-based system with an 'algorithmic' component, despite its apparent randomness. The use of the theory of algorithmic complexity may supply a set of probing new tools that can be applied to the study of the market price phenomenon. Moreover, the main discussion is cast in terms of assumptions common to areas of economics consistent with an algorithmic view of the market."
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"To define oscillatory movements of securities market, we put in the non-local extension of Ito- equation for wavelet-images of random processes. It is proposed an algorithm of creation of evolutionary equation and a model of prediction of the most probable price movement path. It is carried out experimental validation of findings."
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"We show that parametric context-sensitive L-systems with affine geometry interpretation provide a succinct description of some of the most fundamental algorithms of geometric modeling of curves. Examples include the Lane-Riesenfeld algorithm for generating B-splines, the de Casteljau algorithm for generating Bezier curves, and their extensions to rational curves. Our results generalize the previously reported geometric-modeling applications of L-systems, which were limited to subdivision curves."
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"We revisit the matrix problems sparse null space and matrix sparsification, and show that they are equivalent. We then proceed to seek algorithms for these problems: We prove the hardness of approximation of these problems, and also give a powerful tool to extend algorithms and heuristics for sparse approximation theory to these problems."
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"We study equilibrium configurations of swarming biological organisms subject to exogenous and pairwise endogenous forces. Beginning with a discrete dynamical model, we derive a variational description of the corresponding continuum population density. Equilibrium solutions are extrema of an energy functional, and satisfy a Fredholm integral equation. We find conditions for the extrema to be local minimizers, global minimizers, and minimizers with respect to infinitesimal Lagrangian displacements of mass. In one spatial dimension, for a variety of exogenous forces, endogenous forces, and domain configurations, we find exact analytical expressions for the equilibria.…"
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"We survey and show our earlier results about three different ways of fluctuation-enhanced sensing of bio agent, the phage-based method for bacterium detection published earlier; sensing and evaluating the odors of microbes; and spectral and amplitude distribution analysis of noise in light scattering to identify spores based on their diffusion coefficient."
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"We started by scanning existing social value metrics, such as the ones described in the table “10 Ways to Measure Social Value” on page 41. We found hundreds of competing tools, of which foundations and NGOs generally use one set, governments another, and academics yet another. In addition to discovering this segmentation, our survey suggested two more reasons why so few metrics guide real decisions. First, most metrics assume that value is objective, and therefore discoverable through analysis. Yet as most modern economists now agree, value is not an objective fact. Instead, value emerges from the interaction of supply and demand, and ultimately reflects what people or organizations are willing to pay. Because so few of the tools reflect this, they are inevitably misaligned with an organization’s strategic and operational priorities."
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"At first, the collaboration struck many scientists as worrisome — they would be giving up ownership of data, and anyone could use it, publish papers, maybe even misinterpret it and publish information that was wrong.
But Alzheimer’s researchers and drug companies realized they had little choice.
“Companies were caught in a prisoner’s dilemma,” said Dr. Jason Karlawish, an Alzheimer’s researcher at the University of Pennsylvania. “They all wanted to move the field forward, but no one wanted to take the risks of doing it.”"
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"One of the most common discussion points we see around Detroit is comparing it to other cities. Although we believe Detroit stands on its own, it’s natural to try to relate our situation with others.
However, many comparisons are drawn to cities like San Francisco, New York, and Boston – and then we got to thinking."
links for 2010-08-14
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"Fatal crush conditions occur in crowds with tragic frequency. Event organisers and architects are often criticised for failing to consider the causes and implications of crush, but the reality is that the prediction and mitigation of such conditions offers a significant technical challenge. Full treatment of physical force within crowd simulations is precise but computationally expensive; the more common method of human interpretation of results is computationally "cheap" but subjective and time-consuming. In this paper we propose an alternative method for the analysis of crowd behaviour, which uses information theory to measure crowd disorder. We show how this technique may be easily incorporated into an existing simulation framework, and validate it against an historical event. Our results show that this method offers an effective and efficient route towards automatic detection of crush."
links for 2010-08-04
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"We introduce a simple criterion, the CAR score, for ranking and selecting variables in linear regression. The CAR score arises naturally in the best predictor formulation of the linear model, offers a canonical decomposition of the proportion of explained variance, and also takes account of correlation and grouping structure among explanatory variables. As population quantity the CAR score is not tied to any specific inference paradigm. Variable selection based on AIC, $C_p$, BIC, and other information criteria is shown to be equivalent to thresholding CAR scores at a fixed level, whereas using false discovery rates corresponds to an adaptive cutoff. In computer simulations we show that CAR scores are highly effective for variable selection with a prediction error that compares favorable with the elastic net and similar regression procedures. We illustrate the approach by analyzing diabetes data as well as gene expression data from the human frontal cortex."
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"A parameterisation of generalised network clustering, in the form of four-motif prevalences, is presented. This involves three real parameters that are conditional on one- two- and three-motif prevalences. Interpretations of these real parameters are presented that motivate a set of rewiring schemes to create appropriately clustered networks. Finally, the dynamical implications of higher order structure, as parameterised, for a contact process are considered."
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"We have developed a framework to study the struc- ture and function of complex networks in purely geomet- ric terms. In this framework, two common properties of complex network topologies, strong heterogeneity and clustering, turn out to be simple reflections of the basic properties of an underlying hyperbolic geometry. Heterogeneity, measured in terms of the power-law degree distribution exponent, is a function of the negative curvature of the hyperbolic space, while clustering reflects its metric property."
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"We describe the structure of the graphs with the smallest average distance and the largest average clustering given their order and size. There is usually a unique graph with the largest average clustering, which at the same time has the smallest possible average distance. In contrast, there are many graphs with the same minimum average distance, ignoring their average clustering. The form of these graphs is shown with analytical arguments. Finally, we measure the sensitivity to rewiring of this architecture with respect to the clustering coefficient, and we devise a method to make these networks more robust with respect to vertex removal."
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"In this paper we have proposed and studied a simple model of contribution games, in which agents can invest a fixed budget into different relationships. Our results show that collaboration between pairs of players can lead to instabilities and non-existence of pairwise equilibria. For certain classes of functions, the existence of pairwise equilibria is even NP-hard to decide. This implies that it is impossible to decide efficiently if a set of players in a game can reach a pairwise equilibrium. For many interesting classes of games, however, we are able to show existence and bound the price of anarchy to 2. This includes, for instance, a class of games with general convex functions, or minimum effort games with concave functions. Here we are also able to show that best response dynamics converge to pairwise equilibria."
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"On a more philosophical level, our approach points at novel questions that go beyond supervised and semi-supervised learning. What benefit do labels provide over unsupervised training? Can our framework be extended to semi-supervised learning where a few labels do exist? Can it be extended to non-classification scenarios such as margin based regression or margin based structured prediction? When are the assumptions likely to hold and how can we make our framework even more resistant to deviations from them? These questions and others form new and exciting open research directions."
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"High-dimensional correlated data pose challenges in model selection and predictive learning. In this paper, we derive an iterative thresholding technique for generalized linear models (GLMs) with possibly nonorthogonal designs. We propose a family of $\Theta$-estimators which are associated with penalized likelihoods and can be computed by thresholding-based iterative procedures. It can also be used to robustify GLMs and extend the canonical $M$-estimators.…"
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"The problem of arriving at a principled method of pricing goods and services was very satisfactorily solved for conventional goods; however, this solution is not applicable to digital goods. After taking into consideration idiosyncrasies of the digital realm, we give a market model that is appropriate for the digital setting, and a notion of equilibrium for it. We also prove existence of equilibrium for our market model."
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"Nonlinear bilateral filters (BF) deliver a fine blend of computational simplicity and blur-free denoising. However, little is known about their nature, noise-suppressing properties, and optimal choices of filter parameters. Our study is meant to fill this gap-explaining the underlying mechanism of bilateral filtering and providing the methodology for optimal filter selection. Practical application to CT image denoising is discussed to illustrate our results."
links for 2010-08-03
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"For every list of integers x_1, …, x_m there is some j such that x_1 + … + x_j – x_{j+1} – … – x_m \approx 0. So the list can be nearly balanced and for this we only need one alternation between addition and subtraction. But what if the x_i are k-dimensional integer vectors? Using results from topological degree theory we show that balancing is still possible, now with k alternations.
This result is useful in multi-objective optimization, as it allows a polynomial-time computable balance of two alternatives with conflicting costs. The application to two multi-objective optimization problems yields the following results:
- A randomized 1/2-approximation for multi-objective maximum asymmetric traveling salesman, which improves and simplifies the best known approximation for this problem.
- A deterministic 1/2-approximation for multi-objective maximum weighted satisfiability." -
"In this paper we present an efficient computer aided mass classification method in digitized mammograms using Artificial Neural Network (ANN), which performs benign-malignant classification on region of interest (ROI) that contains mass. One of the major mammographic characteristics for mass classification is texture. ANN exploits this important factor to classify the mass into benign or malignant. The statistical textural features used in characterizing the masses are mean, standard deviation, entropy, skewness, kurtosis and uniformity.…"
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"In this paper fusion of visual and thermal images in wavelet transformed domain has been presented. Here, Daubechies wavelet transform, called as D2, coefficients from visual and corresponding coefficients computed in the same manner from thermal images are combined to get fused coefficients. After decomposition up to fifth level (Level 5) fusion of coefficients is done. Inverse Daubechies wavelet transform of those coefficients gives us fused face images. The main advantage of using wavelet transform is that it is well-suited to manage different image resolution and allows the image decomposition in different kinds of coefficients, while preserving the image information.…"
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"In this paper we present a simple novel approach to tackle the challenges of scaling and rotation of face images in face recognition. The proposed approach registers the training and testing visual face images by log-polar transformation, which is capable to handle complicacies introduced by scaling and rotation. Log-polar images are projected into eigenspace and finally classified using an improved multi-layer perceptron. In the experiments we have used ORL face database and Object Tracking and Classification Beyond Visible Spectrum (OTCBVS) database for visual face images. Experimental results show that the proposed approach significantly improves the recognition performances from visual to log-polar-visual face images. …"
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"Here an efficient fusion technique for automatic face recognition has been presented. Fusion of visual and thermal images has been done to take the advantages of thermal images as well as visual images. By employing fusion a new image can be obtained, which provides the most detailed, reliable, and discriminating information. In this method fused images are generated using visual and thermal face images in the first step. In the second step, fused images are projected into eigenspace and finally classified using a radial basis function neural network. In the experiments Object Tracking and Classification Beyond Visible Spectrum (OTCBVS) database benchmark for thermal and visual face images have been used. Experimental results show that the proposed approach performs well in recognizing unknown individuals with a maximum success rate of 96%."
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"The efficiency of a simple model of crossflow fan is maximized when the geometry depends on a design parameter. The flow field is numerically computed using a Galerkin method for solving a Poisson partial differential equation."
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"In this paper, we tackle the problem of innovation spreading from a modeling point of view. We consider a networked system of individuals, with a competition between two groups. We show its relation to the innovation spreading issues. We introduce an abstract model and show how it can be interpreted in this framework, as well as what conclusions we can draw form it. We further explain how model-derived conclusions can help to investigate the original problem, as well as other, similar problems. The model is an agent-based model assuming simple binary attributes of those agents. It uses a majority dynamics (Ising model to be exact), meaning that individuals attempt to be similar to the majority of their peers, barring the occasional purely individual decisions that are modeled as random. We show that this simplistic model can be related to the decision-making during innovation adoption processes. …"
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"This paper proposes some extensions to the work on kernels dedicated to string alignment (biological sequence alignment) based on the summing up of scores obtained by local alignments with gaps. The extensions we propose allow to construct, from classical time-warp distances, what we called summative time-warp kernels that are positive definite if some simple sufficient conditions are satisfied. Furthermore, from the same formalism, we derive a time-warp inner product that extends the usual euclidean inner product, providing the capability to handle discrete sequences or time series of variable lengths in an Hilbert space. The classification experiment we conducted, using either first near neighbor classifier or Support Vector Machine classifier leads to conclude that the positive definite elastic kernels we propose outperform the distance substituting kernels for the classical elastic distances we tested.…"
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"Improvements in technique in conjunction with an evolution of the theoretical and conceptual approach to neuronal networks provide a new perspective on living neurons in culture. Organization and connectivity are being measured quantitatively along with other physical quantities such as information, and are being related to function. In this review we first discuss some of these advances, which enable elucidation of structural aspects. We then discuss two recent experimental models that yield some conceptual simplicity.…"
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"A single target is hidden at a location chosen from a predetermined probability distribution. Then, a searcher must find a second probability distribution from which random search points are sampled such that the target is found in the minimum number of trials. Here it will be shown that if the searcher must get very close to the target to find it, then the best search distribution is proportional to the square root of the target distribution…"
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"Networks portray a multitude of interactions through which people meet, ideas are spread, and infectious diseases propagate within a society. Identifying the most efficient "spreaders" in a network is an important step to optimize the use of available resources and ensure the more efficient spread of information. Here we show that, in contrast to common belief, the most influential spreaders in a social network do not correspond to the best connected people or to the most central people (high betweenness centrality). Instead, we find: (i) The most efficient spreaders are those located within the core of the network as identified by the k-shell decomposition analysis. (ii) When multiple spreaders are considered simultaneously, the distance between them becomes the crucial parameter that determines the extend of the spreading.…"
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"We study the problem of scheduling periodic real-time tasks so as to meet their individual minimum reward requirements. A task generates jobs that can be given arbitrary service times before their deadlines. A task then obtains rewards based on the service times received by its jobs. We show that this model is compatible to the imprecise computation models and the increasing reward with increasing service models. In contrast to previous work on these models, which mainly focus on maximize the total reward in the system, we aim to fulfill different reward requirements by different tasks, which offers better fairness and allows fine-grained tradeoff between tasks. We first derive a necessary and sufficient condition for a system, along with reward requirements of tasks, to be feasible. We also obtain an off-line feasibility optimal scheduling policy.…"
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"Working in Winfree's abstract tile assembly model, we show that a constant-size tile assembly system can be programmed through relative tile concentrations to build an n x n square with high probability, for any sufficiently large n. This answers an open question of Kao and Schweller (Randomized Self-Assembly for Approximate Shapes, ICALP 2008), who showed how to build an approximately n x n square using tile concentration programming, and asked whether the approximation could be made exact with high probability. We show how this technique can be modified to answer another question of Kao and Schweller, by showing that a constant-size tile assembly system can be programmed through tile concentrations to assemble arbitrary finite *scaled shapes*, which are shapes modified by replacing each point with a c x c block of points, for some integer c. …"
links for 2010-08-01
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"e developed a low-cost, high-throughput microbiome profiling method that uses combinatorial sequence tags attached to PCR primers that amplify the rRNA V6 region. Amplified PCR products are sequenced using an Illumina paired-end protocol to generate millions of overlapping reads. Combinatorial sequence tagging can be used to examine hundreds of samples with far fewer primers than is required when sequence tags are incorporated at only a single end.…"
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"Template matching is one of the simplest methods used for eyes and mouth detection. However, it can be modified and extended to become a powerful tool. Since the patch itself plays a significant role in optimizing detection performance, a study on the influence of patch size and shape is carried out. The optimum patch size and shape is determined using the proposed method. Usually, template matching is also combined with other methods in order to improve detection accuracy. Thus, in this paper, the effectiveness of two image processing methods i.e. grayscale and Haar wavelet transform, when used with template matching are analyzed."
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"In this paper we present a comparative study on fusion of visual and thermal images using different wavelet transformations. Here, coefficients of discrete wavelet transforms from both visual and thermal images are computed separately and combined. Next, inverse discrete wavelet transformation is taken in order to obtain fused face image. Both Haar and Daubechies (db2) wavelet transforms have been used to compare recognition results. For experiments IRIS Thermal/Visual Face Database was used. Experimental results using Haar and Daubechies wavelets show that the performance of the approach presented here achieves maximum success rate of 100% in many cases."
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"As we have shown, Cluster Reverberation is a mechanism available to neural systems for robust short-term memory without synaptic learning. To the best of our knowledge, this is the first mechanism proposed which has these charac- teristics – essential for, say, sensory memory or certain working-memory tasks. All that is needed is for the network topology to be highly clustered or modu- lar, and for small groups of neurons to store one bit of information, as opposed to the conventional view which assumes one bit per neuron. Considering the enormous number of neurons in the brain, and the fact that real individual neu- rons are probably too noisy to store information reliably, these hypotheses do not seem farfetched.…"
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"A popular method for selecting the number of clusters is based on stability arguments: one chooses the number of clusters such that the corresponding clustering results are "most stable". In recent years, a series of papers has analyzed the behavior of this method from a theoretical point of view. However, the results are very technical and difficult to interpret for non-experts. In this paper we give a high-level overview about the existing literature on clustering stability. In addition to presenting the results in a slightly informal but accessible way, we relate them to each other and discuss their different implications."
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"We establish concrete mathematical criteria to distinguish between different kinds of written storytelling, fictional and non-fictional. Specifically, we constructed a semantic network from both novels and news stories, with $N$ independent words as vertices or nodes, and edges or links allotted to words occurring within $m$ places of a given vertex; we call $m$ the word distance. We then used measures from complex network theory to distinguish between news and fiction, studying the minimal text length needed as well as the optimized word distance $m$. The literature samples were found to be most effectively represented by their corresponding power laws over degree distribution $P(k)$ and clustering coefficient $C(k)$; we also studied the mean geodesic distance, and found all our texts were small-world networks.…"
links for 2010-07-29
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"We consider the problem of scheduling in multihop wireless networks subject to interference constraints. We consider a graph based representation of wireless networks, where scheduled links adhere to the K-hop link interference model. We develop a distributed greedy heuristic for this scheduling problem. Further, we show that this distributed greedy heuristic computes the exact same schedule as the centralized greedy heuristic."
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"…Here we study the quantitative relation between adaptive response and background compensation within a modeling framework. In contrast to the commonly held view, we show that any particular type of adaptive response is neither sufficient nor necessary for adaptive enlargement of dynamic range. In particular a precise adaptive response, where system activity is maintained at a constant level at steady state, does not ensure a large dynamic range neither in input signal nor in system output. A general mechanism for input dynamic range enlargement comes about from the activity-dependent modulation of protein responsiveness by multiple biochemical modification, regardless of the type of adaptive response it induces. Therefore hierarchical biochemical processes such as methylation and phosphorylation are natural candidates to induce this property in signalling systems."
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"Many models of market dynamics make use of the idea of wealth exchanges among economic agents. A simple analogy compares the wealth in a society with the energy in a physical system, and the trade between agents to the energy exchange between molecules during collisions. However, while in physical systems the equipartition of energy is valid, in most exchange models for economic markets the system converges to a very unequal "condensed" state, where one or a few agents concentrate all the wealth of the society and the wide majority of agents shares zero or a very tiny fraction of the wealth. Here we present an exchange model where the goal is not only to avoid condensation but also to reduce the inequality; to carry out this objective the choice of interacting agents is not at random, but follows an extremal dynamics regulated by the wealth of the agent.…"
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"One direction for future research would be to investi- gate to what extent these counterexamples are special. For example, are all shapes which repel a point charge similar to the hemisphere geometry discussed here, or are there completely different kinds of geometries with this property? More specifically, is it possible to achieve re- pulsion with a convex metallic object? One can ask sim- ilar questions about Casimir repulsion. There are many open questions here—we have only just begun to under- stand these counterintuitive geometric effects."
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"Rotor-router networks are discrete analogues of continuous linear systems such as electrical circuits; they are also deter- ministic analogues of stochastic systems such as random walk processes. These analogies permit one to design rotor-router networks to compute numerical quantities associated with lin- ear and/or stochastic systems. These distributed computations can behave stably even in the presence of significant disruption."
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"Behavior-Driven Development (BDD) is a specification technique that automatically certifies that all functional requirements are treated properly by source code, through the connection of the textual description of these requirements to automated tests. Given that in some areas, in special Enterprise Information Systems, requirements are identified by Business Process Modeling – which uses graphical notations of the underlying business processes, this paper aims to provide a mapping from the basic constructs that form the most common BPM languages to Behavior Driven Development constructs."
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"The study of networks has grown into a substantial interdisciplinary endeavor across the natural, social, and information sciences. Yet there have been very few attempts to investigate the interrelatedness of the different classes of networks studied by different disciplines. Here, we introduced a framework to establish a taxonomy of networks from various origins. The provision of this family tree not only helps understand the kinship of networks, but also facilitates the transfer of empirical analysis, theoretical modeling, and conceptual developments across disciplinary boundaries. The framework is based on probing the mesoscopic properties of networks, an important source of heterogeneity for their structure and function. Using our method, we computed a taxonomy for 752 individual networks and a separate taxonomy for 12 network classes. We also computed three within-class taxonomies for political, fungal, and financial networks, and found them to be insightful in each case."
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"…The h index is compared with the Degree centrality (a local measure), the Betweenness and Eigenvector centralities (two non-local measures) in the case of a biological network (Yeast interaction protein-protein network) and a linguistic network (Moby Thesaurus II). In both networks, the Hirsch index has poor correlation with Betweenness centrality but correlates well with Eigenvector centrality, specially for the more important nodes that are relevant for ranking purposes, say in Search Engine Optimization. In the thesaurus network, the h index seems even to outperform the Eigenvector centrality measure as evaluated by simple linguistic criteria."
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"Despite the availability of very detailed data on financial market, agent-based modeling is hindered by the lack of information about real trader behavior. This makes it impossible to validate agent-based models, which are thus reverse-engineering attempts. This work is a contribution to the building of a set of stylized facts about the traders themselves. Using the client database of Swissquote Bank SA, the largest on-line Swiss broker, we find empirical relationships between turnover, account values and the number of assets in which a trader is invested. A theory based on simple mean-variance portfolio optimization that crucially includes variable transaction costs is able to reproduce faithfully the observed behaviors. We finally argue that our results bring into light the collective ability of a population to construct a mean-variance portfolio that takes into account the structure of transaction costs."
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"We consider the problem of parameter estimation for a system of ordinary differential equations from noisy observations on a solution of the system. In case the system is nonlinear, as it typically is in practical applications, an analytic solution to it usually does not exist. Consequently, straightforward estimation methods like the ordinary least squares method depend on repetitive use of numerical integration in order to determine the solution of the system for each of the parameter values considered, and to find subsequently the parameter estimate that minimises the objective function. This induces a huge computational load to such estimation methods. We propose an estimator that is defined as a minimiser of an appropriate distance between a nonparametrically estimated derivative of the solution and the right-hand side of the system applied to a nonparametrically estimated solution.…"
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"We present designs of 2D isotropic, disordered photonic materials of arbitrary size with complete band gaps blocking all directions and polarizations. The designs with the largest gaps are obtained by a constrained optimization method that starts from a hyperuniform disordered point pattern, an array of points whose number variance within a spherical sampling window grows more slowly than the volume. We argue that hyperuniformity, combined with uniform local topology and short-range geometric order, can explain how complete photonic band gaps are possible without long-range translational order. We note the ramifications for electronic and phononic band gaps in disordered materials."
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"Systems whose organization displays causal asymmetry constraints, from evolutionary trees to river basins or transport networks, can be often described in terms of directed paths (causal flows) on a discrete state space. Such a set of paths defines a feed-forward, acyclic network. A key problem associated with these systems involves characterizing their intrinsic degree of path reversibility: given an end node in the graph, what is the uncertainty of recovering the process backwards until the origin? Here we propose a novel concept, \textit{topological reversibility}, which rigorously weigths such uncertainty in path dependency quantified as the minimum amount of information required to successfully revert a causal path.…"
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"In this paper, a parametric level set method for reconstruction of obstacles in general inverse problems is considered. General evolution equations for the reconstruction of unknown obstacles are derived in terms of the underlying level set parameters. We show that using the appropriate form of parameterizing the level set function results a significantly lower dimensional problem, which bypasses many difficulties with traditional level set methods, such as regularization, re-initialization and use of signed distance function.…"
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"… The aim is to find efficient decompositions that simultaneously minimize the irradiation time, the cardinality of the decomposition and the setup-time to configure the multi-leaf collimator at each step of the decomposition. We propose for this NP-hard multiobjective combinatorial problem a heuristic, based on the adaptation of the two-phase Pareto local search. Experiments are carried out on different size instances and the results are reported."
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"The knapsack problem (KP) and its multidimensional version (MKP) are basic problems in combinatorial optimization. In this paper we consider their multiobjective extension (MOKP and MOMKP), for which the aim is to obtain or to approximate the set of efficient solutions. In a first step, we classify and describe briefly the existing works, that are essentially based on the use of metaheuristics. In a second step, we propose the adaptation of the two-phase Pareto local search (2PPLS) to the resolution of the MOMKP. With this aim, we use a very-large scale neighborhood (VLSN) in the second phase of the method, that is the Pareto local search. We compare our results to state-of-the-art results and we show that we obtain results never reached before by heuristics, for the biobjective instances. Finally we consider the extension to three-objective instances."
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"We consider the problem of computing a response curve for binary cellular automata — that is, the curve describing the dependence of the density of ones after many iterations of the rule on the initial density of ones. We demonstrate how this problem could be approached using rule 130 as an example. For this rule, preimage sets of finite strings exhibit recognizable patterns, and it is therefore possible to compute both cardinalities of preimages of certain finite strings and probabilities of occurrence of these strings in a configuration obtained by iterating a random initial configuration $n$ times. Response curves can be rigorously calculated in both one- and two-dimensional versions of CA rule 130. We also discuss a special case of totally disordered initial configurations, that is, random configurations where the density of ones and zeros are equal to 1/2."
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"This paper presents a new numerical approach to the study of non-periodicity in signals, which can complement the maximal Lyapunov exponent method for determining chaos transitions of a given dynamical system. The proposed technique is based on the continuous wavelet transform and the wavelet multiresolution analysis. A new parameter, the \textit{scale index}, is introduced and interpreted as a measure of the degree of the signal's non-periodicity. This methodology is successfully applied to three classical dynamical systems: the Bonhoeffer-van der Pol oscillator, the logistic map, and the Henon map."

